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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jose Murillo | Tied for 4th | Tied for 1st | Tied for 4th | |
| First Basemen | Ben Kemper | Tied for 8th | Tied for 1st | Tied for 8th | |
| Second Basemen | Lorenzo Reyes | Tied for 28th | Tied for 1st | Tied for 28th | |
| Third Basemen | Aaron Jankowski | 16th | Tied for 1st | 16th | |
| Shortstops | Phil Wald | Tied for 23rd | Tied for 1st | Tied for 23rd | |
| Left Fielders | Eric Morse | 13th | Tied for 1st | 13th | |
| Center Fielders | Sean Cook | 30th | Tied for 1st | 30th | |
| Right Fielders | Mike Mitchell | 5th | Tied for 1st | 5th | |
| Starting Pitchers | Mario Garcia | 15th | Tied for 1st | 15th | |
| Relievers | Aaron Perlmutter | 5th | Tied for 1st | 5th | |
| Closers | Aaron Perlmutter | Tied for 15th | Tied for 1st | Tied for 15th |
