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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Ted Mueller | Tied for 27th | Tied for 1st | Tied for 27th | |
| First Basemen | Neil Milito | 3rd | Tied for 1st | 3rd | |
| Second Basemen | Kyle Pfaff | 29th | Tied for 1st | 29th | |
| Third Basemen | John Quinnett | 25th | Tied for 1st | 25th | |
| Shortstops | Adam Schoonover | 5th | Tied for 1st | 5th | |
| Left Fielders | Dusty Eisenberg | Tied for 43rd | Tied for 1st | Tied for 43rd | |
| Center Fielders | John Akkerman | 21st | Tied for 1st | 21st | |
| Right Fielders | Tim Bustamante | 7th | Tied for 1st | 7th | |
| Starting Pitchers | Kasey Fitzsimmons | 10th | Tied for 1st | 10th | |
| Relievers | Tim Silbert | 3rd | Tied for 1st | 3rd | |
| Closers | Tim Silbert | Tied for 20th | Tied for 1st | Tied for 20th |
